Team

García Oliver, Maximiliano (Computer Science engineering)

Max joined the group in May 2006 to act as a part time researcher of the University of Malaga participation in the European project ACGT (Advanced Clinico-Genomic Trials on Cancer) (http://www.eu-acgt.org/). His research interests are in integrated grid environments (http://moss1.man.poznan.pl/gridsphere), Web Services architecture, Database Management and Software for data and service integration. He is a computer science technician and is currently complementing his Computer Science studies at the University of Malaga.

  • Some skills
    • Server administration
    • Databases Administration (MySQL, Oracle, etc.)
    • Programing IDE and lenguage(java,c,c++,etc.)
    • Web technologies.
    • ...
  • Work:
    • Database Administration. Asinco Informática S.L.
    • Colaboration in projects with Asociación Malagueña de Hemofilia. Servicio de Atención Integral On-Line en Hemofilia (SAI.ORG)
    • Now working in a ACGT project at the University of Malaga.
C.V.
Karlsson, Johan (Masters degree in Computer Science)
Johan joined the group in October 2005 to act as internal technical coordinator in the INB (National Institute for Bioinformatics) project. He is responsible for the development of the client and external communication with BioMOBY community. His main tasks so far has been to coordinate and contribute to documentation of the client and elaborate and discuss the proposals for extending BioMOBY.
C.V.
Martin Requena, Victoria (Computer Science engineering)

Vicky joined the group in June 2006 as part-time researcher in the ESP-SOL Project, during this period she developed pUMA (Genomic web project manager). In October 2007 she joined the INB project, since then, she has been developing jORCA (Easily integrating web services repositories). She is also involved in the implementation of PreP+ 07. Her research interest is gene-expression data analisys software and standalone clients . She is a computer science technician and is currently complementing his Computer Science studies at the University of Malaga

  • Some skills
    • Web applications (php, jsp,javascript,flash...).
    • Java Standalone clients and Visual C++ clients.
    • DataBases
    • Gene-expression data analisys programs
  • Work:
    • INB contact person for genomic projects (Oligen, riraaf..)
    • jORCA.
    • pUMA design with Fernando.
    • PreP+07.
C.V.
Mateos Durán, José Manuel(Computer Science engineer)
  • Skills:
    • Web programming: ActionScript, Javascript, PHP, ASP, XHTML, CSS, XML.
    • Programing languages: Java, c/c++, Haskell, Prolog, Python.
    • DataBases: MySQL, Oracle, PostgreSql, SQLServer.
  • Work:
    • RIA developer. Iavante Foundation.
    • Coordinator of RIAs and multimedia web projects. Genera Internet Technologies.
    • Now working in INB node at the University of Malaga.
Muñoz Mérida, Antonio (Biologist)

Antonio Muñoz (NONO) joined the group in June 2006 as part of ESP-SOL Project. He is biologist doing his PhD research in bioindormatics and his main task in the group is the data analysis generated in the project. In addition, he offers his point of view in all the develops produced in the group. In the ends of 2007 he joined the INB project widen his tasks to the web services develop and workflows production. Actually he is involved in data analysis of several projects: tomato (ESP-SOL project), porcine (infection process in porcine by PCV2), strawberry (involved factors in strawberry ripening) and olive-tree (OLIGEN project).

  • Skills:
    • Microarray data analysis from pre-processing and data quality to candidates gene selection.
    • Web services and workflows.
    • MicroRNAs detection.
    • Programing languages: Perl
  • Work:
    • Data analysis in general.
    • Program tester.
    • Web services and workflows developer.
C.V.
Ríos Perez, F. Javier
  • Skills:
    • Web programming: PHP, SOAP, XML, HTML, XHTML, Javascript, Applets, Flash.
    • Programing languages: java, c/c++, Haskell, Prolog, VisualBasic, LISP.
    • DataBases: MySQL, Oracle, SQL and PLSQL.
  • Work:
    • Online Distance E-Learning software. Asociación Malagueña de Hemofilia.
    • Now working in a ACGT project at the University of Malaga.
C.V.
Trelles Salazar, Oswaldo

I'm industrial engineer by the Universidad Catolica of Peru, hold a M.Sc. degree in Computer Sciences by the Polytechnical University of Madrid; a Ph.D. degree in industrial engineering by the University of Málaga working on Parallel algorithms for biological sequences analysis in supercomputers, and recently I got a M.Sc. degree in Cellular and Molecular Biology also at the University of Malaga.

Currently I work as Associated Professor in the Department of Computer Architecture in the University of Málaga, teaching Fundamentals and Design of Operating Systems and Parallel applications in bioinformatics, in the Computer Science faculty. My main research interests include parallel paradigms for distributed and shared memory parallel computers; data mining and automatic knowledge discovering in biological and biomedical data and design and deplyment of software architectures for the integration of data and services in the bioinformatics field. I have also the pleasure to coordinate our BitLab group.

C.V.
 
Team's collaborators

Additionally, we receive the invaluable (and free) help from the following professors at the UMA and other Universities:

Aldana Montes, José (PhD in Computer sciences):
Semantic web
Claros, Gonzalo (PhD in Biology) :
coordinator of the ontology committee
Perez Pulido, Antonio J. (PhD. in Biology)
Antonio provides the group with the necessary user perspective by testing the utility and user friendliness of clients. He works in datamining and functional genomics, and he is interested in gene expression data where in silico predictions can be evaluated.
Sánchez, Kika (PhD in Biology):
user-perspective support for structure analysis applications.
Thode, Guillermo (PhD in Biology):
user-perspective support for sequence analysis applications.
Viguera, Enrique (PhD in Biology):
user-perspective support for gene-expression data applications.
 
Ex-members
Barranco Muros, Fernando(Computer Science engineer)
  • Skills:
    • Web technologies including dynamic(php, jsp,javascript...) tools.
    • Networks: Cisco courses.
    • Main programing IDE and lenguage(java,c#,c++...) knowledge, DataBases (MySql, Oracle..).
  • Work:
    • Now working in a web based project Management, Puma (oligen, riraaf).
Fernandez Santa Cruz Jimenez, Raúl (Computer Science engineering)
His main task is the extension and improvement of the workflow module in the INB platform.
García de la Nava, Jorge (Telecommunications and Computer sciences engineering)
Jorge was acting as our technical coordinator in the first phase of the project (from October 2004 to March 2005). He drawn the main lines of the system architecture and he prepared the initial draft proposals for extending BioMOBY using asynchronous services and dealing with collections.
García Diez, Federico (Computer Science engineering)
Federico joined the group in May 2006 to act as an internal technical coordinator of the University of Malaga participation in the European project ACGT (Advanced Clinico-Genomic Trials on Cancer) (http://www.eu-acgt.org/). His research interests are in integrated grid environments, KDD and Life Sciences. He is currently complementing his Computer Science background by undertaking a Masters degree in Molecular Bilogy at the University of Malaga.
Martínez López, Alfredo(Computer Science engineer)
  • Skills:
    • Web programming: HTML, Javascript, XML, Applets, JSP.
    • Programing languages: java, c, c++ ..
    • DataBases: MySQL, Oracle.
  • Work:
    • Joined the OLIGEN group in march 2008.
    • Now working as Object (gene computer representation) Expert.
Navas, Ismael (Computer Science engineering)
Ismael has accomplished two main tasks during these two years in the INB project: building of the base for the client interface and workflow support development.
Ramírez Ramírez, Sergio (Computer Science engineering)
  • Skills:
    • Web programming: JSP, PHP, SOAP, XML, HTML, Javascript, CGI´s programming, Applets
    • Programing languages: java, c++, Ada, Perl.
    • DataBases: MySQL, Postgress, Oracle, SyBase, SQL and PLSQL
    • Additional knowledge:
      • Computer vision
      • Image processing
      • MatLab and Simulink
      • Computer security and cryptography
      • Windows and Linux Systems administration
      • Distributed systems
      • UML design
      • Analysis and design of informatics systems
  • Work:
    • Technical coordinator for the INB node in the Malaga University's.
  • Main lines:
    • Distributed architectures for data integration.
C.V.
Rojano Muñoz, María del Mar (Computer Science engineering)
Is in charge of the Client interfase in the INB platform.
Sola Vázquez, Alejandro (Computer Science engineering)
Part time researchers on ACGT